Monasson, Remi: search on Z-Library

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1

10.1038/22055

Kirkpatrick, Scott, Monasson, Rémi, Zecchina, Riccardo, Selman, Bart, Troyansky, Lidror

Journal:

Year:

1999

Language:

english

File:

PDF, 222 KB

english, 1999

2

`Place-cell' emergence and learning of invariant data with restricted Boltzmann machines: breaking and dynamical restoration of continuous symmetries in the weight space

Harsh, Moshir, Tubiana, JÃ©rÃ´me, Cocco, S, Monasson, Remi

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2020

File:

PDF, 2.00 MB

2020

3

Restarts and Exponential Acceleration of the Davis–Putnam–Loveland–Logemann Algorithm: A Large Deviation Analysis of the Generalized Unit Clause Heuristic for Random 3-SAT

Simona Cocco, Rémi Monasson

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

2005

Language:

english

File:

PDF, 288 KB

english, 2005

4

Weight Space Structure and Internal Representations: A Direct Approach to Learning and Generalization in Multilayer Neural Networks

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review Letters

Year:

1995

Language:

english

File:

PDF, 280 KB

english, 1995

5

Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models

Jacquin, Hugo, Gilson, Amy, Shakhnovich, Eugene, Cocco, Simona, Monasson, Rémi, Marks, Debora S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.19 MB

english, 2016

6

Innovation Rather than Improvement: A Solvable High-Dimensional Model Highlights the Limitations of Scalar Fitness

Tikhonov, Mikhail, Monasson, Remi

Journal:

Journal of Statistical Physics

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

7

Weight Space Structure and Internal Representations: A Direct Approach to Learning and Generalization in Multilayer Neural Networks

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review Letters

Year:

1996

File:

PDF, 73 KB

1996

8

Restarts and exponential acceleration of the Davis-Putnam-Loveland-Logemann algorithm: A large deviation analysis of the generalized unit clause heuristic for random 3-SAT

Simona Cocco, Rémi Monasson

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

2005

Language:

english

File:

PDF, 298 KB

english, 2005

9

Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping

Simona Cocco, John F. Marko, Rémi Monasson

Journal:

Comptes Rendus Physique

Year:

2002

File:

PDF, 206 KB

2002

10

Inverse Statistical Physics of Protein Sequences: A Key Issues Review

Cocco, S, Feinauer, Christoph, Figliuzzi, Matteo, Monasson, Remi, Weigt, Martin

Journal:

Reports on Progress in Physics

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

11

Learning Probabilities From Random Observables in High Dimensions: The Maximum Entropy Distribution and Others

Obuchi, Tomoyuki, Cocco, Simona, Monasson, Rémi

Journal:

Journal of Statistical Physics

Year:

2015

Language:

english

File:

PDF, 1.18 MB

english, 2015

12

Heuristic average-case analysis of the backtrack resolution of random 3-satisfiability instances

Simona Cocco, Rémi Monasson

Journal:

Theoretical Computer Science

Year:

2004

Language:

english

File:

PDF, 548 KB

english, 2004

13

Circuits in random graphs: from local trees to global loops

Marinari, Enzo, Monasson, Rémi

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2004

Language:

english

File:

PDF, 369 KB

english, 2004

14

Neuronal couplings inferred by an efficient inverse Ising method

Simona Cocco, Stanislas Leibler, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2009

Language:

english

File:

PDF, 173 KB

english, 2009

15

-satisfiability model

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review E

Year:

1997

Language:

english

File:

PDF, 283 KB

english, 1997

16

Inference of Hopfield-Potts patterns from covariation in protein families: calculation and statistical error bars

Cocco, Simona, Monasson, Rémi, Weigt, Martin

Journal:

Journal of Physics Conference Series

Year:

2013

Language:

english

File:

PDF, 971 KB

english, 2013

17

Functional coupling networks inferred from prefrontal cortex activity show experience-related effective plasticity

Tavoni, Gaia, Ferrari, Ulisse, Battaglia, Francesco P., Cocco, Simona, Monasson, Rémi

Journal:

Network Neuroscience

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

18

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses

Greenbaum, Benjamin D., Cocco, Simona, Levine, Arnold J., Monasson, Rémi

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 824 KB

english, 2014

19

Unzipping dynamics of long DNAs

Cocco, Simona, Monasson, Rémi, Marko, John F.

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 146 KB

english, 2002

20

Trajectories in Phase Diagrams, Growth Processes, and Computational Complexity: How Search Algorithms Solve the 3-Satisfiability Problem

Cocco, Simona, Monasson, Rémi

Journal:

Physical Review Letters

Year:

2001

Language:

english

File:

PDF, 112 KB

english, 2001

21

Dynamical modeling of molecular constructions and setups for DNA unzipping

Barbieri, Carlo, Cocco, Simona, Monasson, Rémi, Zamponi, Francesco

Journal:

Physical Biology

Year:

2009

Language:

english

File:

PDF, 330 KB

english, 2009

22

On the Entropy of Protein Families

Barton, John P., Chakraborty, Arup K., Cocco, Simona, Jacquin, Hugo, Monasson, Rémi

Journal:

Journal of Statistical Physics

Year:

2016

Language:

english

File:

PDF, 2.02 MB

english, 2016

23

On Large Deviation Properties of Erdös–Rényi Random Graphs

Andreas Engel, Rémi Monasson, Alexander K. Hartmann

Journal:

Journal of Statistical Physics

Year:

2004

Language:

english

File:

PDF, 407 KB

english, 2004

24

From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction

Cocco, Simona, Monasson, Remi, Weigt, Martin, Wallner, Björn

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.05 MB

english, 2013

25

Optimization problems and replica symmetry breaking in finite connectivity spin glasses

Monasson, Rémi

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

1998

Language:

english

File:

PDF, 207 KB

english, 1998

26

Continuous or dicrete? Attractor dynamics and spatial representations in a model of the hippocampal network

Federico Stella, Remi Monasson, Alessandro Treves

Journal:

BMC Neuroscience

Year:

2013

Language:

english

File:

PDF, 70 KB

english, 2013

27

Trend and fluctuations: Analysis and design of population dynamics measurements in replicate ecosystems

Hekstra, Doeke R., Cocco, Simona, Monasson, Remi, Leibler, Stanislas

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 1019 KB

english, 2013

28

The dynamics of proving uncolourability of large random graphs: I. Symmetric colouring heuristic

Ein-Dor, Liat, Monasson, Rémi

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

2003

Language:

english

File:

PDF, 263 KB

english, 2003

29

Protein and RNA Structure Prediction by Integration of Co-Evolutionary Information into Molecular Simulation

De Leonardis, Eleonora, Lutz, Benjamin, Cocco, Simona, Monasson, Remi, Szurmant, Hendrik, Weigt, Martin, Schug, Alexander

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 56 KB

english, 2015

30

Learning probability distributions from smooth observables and the maximum entropy principle: some remarks

Obuchi, Tomoyuki, Monasson, Rémi

Journal:

Journal of Physics Conference Series

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

31

Functional networks from inverse modeling of neural population activity

Cocco, Simona, Monasson, Rémi, Posani, Lorenzo, Tavoni, Gaia

Journal:

Current Opinion in Systems Biology

Year:

2017

Language:

english

File:

PDF, 2.42 MB

english, 2017

32

Cross-talk and transitions between multiple environments in an attractor neural network model of the hippocampus

Sophie Rosay, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2013

Language:

english

File:

PDF, 144 KB

english, 2013

33

Reconstruction and Identification of DNA Sequence Landscapes from Unzipping Experiments at Equilibrium

Barbieri, Carlo, Cocco, Simona, Jorg, Thomas, Monasson, Rémi

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1008 KB

english, 2014

34

Functional connectivity models for decoding of spatial representations from hippocampal CA1 recordings

Posani, Lorenzo, Cocco, Simona, Ježek, Karel, Monasson, Rémi

Journal:

Journal of Computational Neuroscience

Year:

2017

Language:

english

File:

PDF, 2.00 MB

english, 2017

35

2+p-SAT: Relation of typical-case complexity to the nature of the phase transition

Rémi Monasson, Riccardo Zecchina, Scott Kirkpatrick, Bart Selman, Lidror Troyansky

Journal:

Random Structures & Algorithms

Year:

1999

Language:

english

File:

PDF, 405 KB

english, 1999

36

Entropy of particle packings: An illustration on a toy model

Rémi Monasson, Olivier Pouliquen

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

1997

Language:

english

File:

PDF, 1.21 MB

english, 1997

37

Adaptive cluster algorithm to infer Boltzmann machines from multi-electrode recording data

Simona Cocco, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2011

Language:

english

File:

PDF, 143 KB

english, 2011

38

Entropy of the K -Satisfiability Problem

Monasson, Rémi, Zecchina, Riccardo

Journal:

Physical Review Letters

Year:

1996

Language:

english

File:

PDF, 170 KB

english, 1996

39

Estimating the principal components of correlation matrices from all their empirical eigenvectors

Monasson, Rémi, Villamaina, Dario

Journal:

EPL (Europhysics Letters)

Year:

2015

Language:

english

File:

PDF, 692 KB

english, 2015

40

Direct coevolutionary couplings reflect biophysical residue interactions in proteins

Coucke, Alice, Uguzzoni, Guido, Oteri, Francesco, Cocco, Simona, Monasson, Remi, Weigt, Martin

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 4.01 MB

english, 2016

41

Integration and multiplexing of positional and contextual information by the hippocampal network

Posani, Lorenzo, Cocco, Simona, Monasson, Rémi, Bush, Daniel

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 4.12 MB

english, 2018

42

Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins

Tubiana, Jérôme, Cocco, Simona, Monasson, Rémi

Journal:

Neural Computation

Year:

2019

Language:

english

File:

PDF, 2.43 MB

english, 2019

43

Structural Glass Transition and the Entropy of the Metastable States

Monasson, Rémi

Journal:

Physical Review Letters

Year:

1995

Language:

english

File:

PDF, 286 KB

english, 1995

44

Tricritical points in random combinatorics: the -SAT case

Monasson, Rémi, Zecchina, Riccardo

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

1998

Language:

english

File:

PDF, 138 KB

english, 1998

45

Relaxation and metastability in a local search procedure for the random satisfiability problem

Semerjian, Guilhem, Monasson, Rémi

Journal:

Physical Review E

Year:

2003

Language:

english

File:

PDF, 222 KB

english, 2003

46

Exponentially hard problems are sometimes polynomial, a large deviation analysis of search algorithms for the random satisfiability problem, and its application to stop-and-restart resolutions

Cocco, Simona, Monasson, Rémi

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 88 KB

english, 2002

47

Inferring interactions in assemblies of stochastic integrate-and-fire neurons from spike recordings: method, applications and software

Carlo Barbieri, Simona Cocco, Rémi Monasson

Journal:

BMC Neuroscience

Year:

2011

Language:

english

File:

PDF, 140 KB

english, 2011

48

Statistical mechanics methods and phase transitions in optimization problems

Olivier C. Martin, Rémi Monasson, Riccardo Zecchina

Journal:

Theoretical Computer Science

Year:

2001

Language:

english

File:

PDF, 409 KB

english, 2001

49

Statistical Mechanics of Torque Induced Denaturation of DNA

Cocco, Simona, Monasson, Rémi

Journal:

Physical Review Letters

Year:

1999

Language:

english

File:

PDF, 73 KB

english, 1999

50

Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction

De Leonardis, Eleonora, Lutz, Benjamin, Ratz, Sebastian, Cocco, Simona, Monasson, Rémi, Schug, Alexander, Weigt, Martin

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

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